Detailed Information for Phage Phabio | |
Discovery Information | |
Former names | UMAWPhabio |
Found By | Eugene Darfour |
Year Found | 2013 |
Location Found | Alexandria , VA United states |
Finding Institution | University of Mary Washington |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
GPS Coordinates | 24.502 N, 54.169 W Map |
Discovery Notes | 26 cm away from a sidewalk, has a lot of foot traffic, the soil was fairly dry. |
Naming Notes | I just randomly thought of it. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Dec 11, 2013 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 1459 |
Genome length (bp) | 165330 |
GC Content | 37.7% |
Character of genome ends | Direct Terminal Repeat |
Direct Terminal Repeat Length | 2808 bp |
End Determination Notes | Buildup of reads from Illumina shotgun sequencing data. |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | C |
Subcluster | C3 |
Other Cluster Members |
Click to ViewHydralpha (None) JoeB (None) AaronPhadgers (C1) ALPS (C1) Archie14 (C1) Azalea (C1) Belinda (C1) Bhoosica (C1) Cletus (C1) DingnCase (C1) Dingus (C1) DirtyBetty (C1) Doofinshmirtz (C1) Elmer (C1) Escavirius (C1) Eyuki (C1) Freefood (C1) FreightTrain (C1) Grumio (C1) Hakuna (C1) Helga (C1) HonestAbe (C1) Ilona (C1) Kida (C1) Kota (C1) Lilihipha (C1) Megatron (C1) MightyMouse (C1) Momo (C1) Nemo (C1) Nigalana (C1) NotTheCreek (C1) OmnioDeoprimus (C1) Parsons (C1) PPIsBest (C1) Rex16 (C1) SageFayge (C1) SalinJah (C1) STSebastian (C1) Terra (C1) WPh (C1) Zuko (C1) Anthony (C2) Bastille (C2) CAM003 (C2) Evoli (C2) Herbert (C2) HoodyT (C2) Hudslayer (C2) Janet (C2) Kamfam (C2) OTooleKemple52 (C2) Vinny (C2) Adelynn (C3) Ampersand (C3) Anthos (C3) AvesoBmore (C3) B4 (C3) BigBertha (C3) ChannelFever (C3) Chotacabras (C3) ChurroBlast (C3) Flapjack (C3) GypsyDanger (C3) Joonam (C3) Juglone (C3) Natp (C3) Oregano (C3) Phabio (C3) Phrodo (C3) Riley (C3) Spock (C3) Taffo16 (C3) Troll (C3) Typhen (C3) BC4U (C4) BCP78 (C4) TsarBomba (C4) Bcp1 (C5) BM10 (C5) Hobo (C5) Kioshi (C5) |
Plaque Notes | Generally all plaques were uniformly round, ranging from between 1.7 cm and 3mm in diameter. My results were three plates resulted in clear plaques present and two plates with temperate plaques. (My forth round had plaques that presented a yellowish orange substance due to accidental contamination). I always incubated for 48 hours at room temperature (23 Celsius) and stored in a refrigerator (4 Celsius). |
Morphotype | Myoviridae |
Final annotation complete? | No |
Has been Phamerated? | No |
Uploaded to GenBank? | No |
Available Files | |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |