Details for Phage Riley
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| Detailed Information for Phage Riley | |
| Discovery Information | |
| Found By | Erica Falvey |
| Year Found | 2012 |
| Location Found | Lincroft, NJ United States |
| Finding Institution | University of Mary Washington |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| GPS Coordinates | 40.328121 N, 74.103175 W Map |
| Discovery Notes | The soil sample this phage came from was taken at a depth of approximately 7.62 cm (3 inches) on 8/20/12. It was about 75°F that day. The soil was somewhat moist and taken from a patch of soil next to my house (located in a suburban area). It was surrounded by trees, shrubs, grass, etc. and was very close to an area with heavy foot-traffic. |
| Naming Notes | My beloved dog is named Riley! |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 20, 2013 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Ion Torrent Sequencing |
| Approximate Shotgun Coverage | 180 |
| Sanger Finishing Reactions | 9 |
| Genome length (bp) | 162816 |
| GC Content | 37.8% |
| Character of genome ends | Unknown |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AF |
| Subcluster | AF1 |
| Other Cluster Members |
Click to View |
| Plaque Notes | Most of my plaques appeared turbid when plated. This could indicate that the phage was lysogenic in nature. |
| Morphotype | Myoviridae |
| Final annotation complete? | Yes |
| Number of Genes | 291 |
| Has been Phamerated? | No |
| Uploaded to GenBank? | Yes: KJ489402.1 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
